# Makefile 
#
#     $Log $
#
#
# Usage:
#
#
#  Some useful compile flags are:
#
#      -O           Compiler optimization
#      -fno-globals    Allows one to pass mismatched typed into subroutines
#      -fdollar-ok     Variable names can contain $ symbol
#
#FFLAGS = -O -Wall -fsecond-underscore
#CPPOPTS = -O  -Wall
#
########################################################################
#         Should not have to change these.....
#FC = g77
CPP = g++
CC = gcc

FC	= gfortran
#FC	= g77

LIBDIR  =../../lib
INCDIR  =../../include

OPTIONS		= -g -O -Wall

INCLUDES	= -I./ -I../../include -I/usr/include/netcdf-3
LINCLUDES	= -L./ -L$(LIBDIR)
#LDOPTIONS       = -b elf32-i386
LDOPTIONS       = 
DEFINES		= 
CFLAGS		= $(OPTIONS) $(DEFINES) $(INCLUDES)
CPPFLAGS	= $(CFLAGS)
FFLAGS		= $(OPTIONS) -fsecond-underscore
#INCLUDES = 	-I./ -I../../include
#		-I /usr/local/include/Radtran  \
#		-I/home/Owner/Projects/SOFIE_L1/Code/include  \
#		-I/usr/include/boost-1_33_1

LIB = libSOFIE_ret.a
BINDIR = ../../bin

#CPPFLAGS = $(CPPOPTS) $(INCLUDES)
#
#######################################################################
#
OBJS =		$(LIB)(Level1Data.o ) \
		$(LIB)(LoadLinesFromDB.o) \
		$(LIB)(Molecule.o) \
		$(LIB)(read_l1_event.o ) \
		$(LIB)(get_average_l1_data.o) \
		$(LIB)(get_l1_zpt.o) \
		$(LIB)(get_l1_za.o) \
		$(LIB)(sofie_lbl_model.o) \
		$(LIB)(sofie_mega_model.o ) \
		$(LIB)(load_fovdata.o) \
		$(LIB)(make_db_connections.o ) \
		$(LIB)(kill_db_connections.o ) \
		$(LIB)(check_products.o) \
            	$(LIB)(get_control_file.o) \
		$(LIB)(get_iblk_ids.o) \
		$(LIB)(create_z_grid.o) \
		$(LIB)(merge_into_clim.o) \
		$(LIB)(insert_profile_db.o) \
		$(LIB)(extend_tran_profile.o) \
		$(LIB)(insert_l2_summary.o) \
		$(LIB)(calc_limb_refraction.o) \
		$(LIB)(smooth_profile.o) \
		$(LIB)(calc_sim_exo.o) \
		$(LIB)(read_waccm_interp.o) \
		$(LIB)(read_waccmc2_interp.o) \
		$(LIB)(fov_atm_convolution.o) \
		$(LIB)(decide_to_process.o) \
		$(LIB)(get_waccm_climatology.o) \
		$(LIB)(get_waccmc2_climatology.o) \
		$(LIB)(create_sim_signal.o) \
		$(LIB)(NonLinearity.o) \
		$(LIB)(load_fov_offsets.o) \
		$(LIB)(derivative.o) \
		$(LIB)(sofiefov.o) \
$(LIB)(sofie_find_ice.o) \
$(LIB)(sofie_ice_t.o) \
$(LIB)(set_nvar.o) \
$(LIB)(openfile.o) \
$(LIB)(closefile.o) \
$(LIB)(minv.o) \
$(LIB)(liner.o) \
$(LIB)(location.o) \
$(LIB)(init_radtran.o) \
$(LIB)(retrieval_options_setup.o) \
$(LIB)(mesh.o) \
$(LIB)(hydro.o) \
$(LIB)(radgrav.o) \
$(LIB)(filterlimits.o) \
$(LIB)(smooth.o) \
$(LIB)(calc_simexo.o) \
$(LIB)(conv_fov_atm_sun.o ) \
$(LIB)(conv_fov_atm_sun_old.o ) \
$(LIB)(get_waccmfile_interp.o) \
$(LIB)(get_waccmc2file_interp.o) \
$(LIB)(waccm_atmstate_interp.o ) \
$(LIB)(waccmc2_atmstate_interp.o ) \
$(LIB)(get_msis_data.o) \
$(LIB)(set_var.o) \
$(LIB)(readfasatm2.o ) \
$(LIB)(get_sabero_clim.o ) \
$(LIB)(f_dse.o ) \
$(LIB)(adjust_l1_alts.o) \
$(LIB)(sofie_tblbld.o) \
$(LIB)(apply_ncep_offset.o) \
$(LIB)(h2o_vapr_ice_rapp05.o) \
$(LIB)(h2o_vapr_ice_mauersberger.o) \
$(LIB)(ice_equilib3.o ) \
$(LIB)(init_aerosols.o) \
$(LIB)(refraction.o) \
$(LIB)(pathlength.o) \
$(LIB)(save_pop_ratios.o) \
$(LIB)(interpolate_pop_ratios.o) \
$(LIB)(get_meas_refraction_angle.o) \
$(LIB)(simulate_refraction_angle.o) \
$(LIB)(create_merged_refrac.o) \
$(LIB)(copy_profile.o) \
$(LIB)(copy_qmix.o) \
$(LIB)(copy_qmix2.o) \
$(LIB)(dumptran.o) \
$(LIB)(get_level1_data_replace.o) \
$(LIB)(save_aero_extinc.o) \
$(LIB)(make_dv_extinction2.o) \
$(LIB)(check_pmc_date.o)


	
#
############################################################################
#  should not change anything below this line
#
$(LIB):		$(OBJS) $(DEFS)
		ranlib $(LIB)

lib:	$(LIB)

clean:
	-rm -f *.a *.o S3SofieRet
	-rm -f shlibs/* .s3/*
	-rm -f s3_S3SofieRet.c
	
init:

prog:	$(LIB)
	( $(BINDIR)/s3exec -s S3SofieRet )
	install S3SofieRet $(BINDIR)
#
#